The Conley-Morse Graphs Software
File List
Here is a list of all files with brief descriptions:
 bytecompr.hWriting and reading binary data (int, double) with bzip2 compression
 byteutil.hUtility procedures for writing and reading entire data structures with bzip2 compression, using the two classes "ByteCompressor" and "ByteDecompressor" defined elsewhere
 c_differ.hConfiguration for a sample difference equation
 c_duffing_a.hConfiguration for an approximate time-t map for the Duffing equations
 c_globclog.hConfiguration for globally coupled logistic maps
 c_harvest.hConfiguration for a nonlinear population model map with harvesting
 c_henon.hConfiguration for the Henon map
 c_inf_t.hConfiguration for the time-t map for an infectious disease model
 c_lorenz.hConfiguration for the time-t map for the Lorenz equations
 c_lorenz_a.hConfiguration for an approximate time-t map for the Lorenz equations
 c_lorenz_t.hConfiguration for the time-t map for the Lorenz equations, computed using tight enclosures
 c_neuron09.hConfiguration for the Chialvo neuron model in R^2 with 2 varying parameters
 c_neuron12.hConfiguration for the Chialvo neuron model in R^2 with 2 varying parameters
 c_neuron25.hConfiguration for the Chialvo neuron model in R^2 with 2 varying parameters
 c_periodic.hConfiguration for a sample silly periodic map
 c_pop2demo.hConfiguration for a sample Leslie population model in R^2 with 2 varying parameters
 c_pop2p.hConfiguration for a sample Leslie population model in R^2 with 2 varying parameters
 c_roessler_a.hConfiguration for an approximate time-t map for the Roessler equations
 c_stdmap.hConfiguration for the Standard Map
 c_twocirc.hConfiguration for two circles - a simple test map with two invariant circles
 c_twotorus.hConfiguration for two circles at a torus - a simple test map with two invariant circles
 c_vpol.hConfiguration for the time-t map for the Vanderpol equations
 c_vpol1.hConfiguration for the time-t map for the Vanderpol equations
 c_vpol_a.hConfiguration for an approximate time-t map for the Vanderpol equations
 c_whales.hConfiguration for the whales population model
 cmgraphs.cppConley-Morse graphs - the main program
 cmsingle.cppComputing a single Conley-Morse graph
 compmap.cppComputing the map on a given set of cubes at the final subdivision depth
 compmdec.hComputation of Morse decompositions
 config.hChoice of configuration settings
 confinfo.hWriting configuration settings to an output stream
 conindex.hConley index computation routines
 coord.hThe coordinator class for the Conley-Morse graphs computation program
 coverrect.hCovering a rotated rectangular set or a paralellepiped with cubes with respect to a fixed grid in R^n
 dataconv.hData conversion for sending/receiving
 datatext.hConverting a binary data buffer into a printable text and vice versa
 datavector.hData conversion for sending/receiving: std::vectors and hashed sets of any objects
 dotgraph.hWriting a graph in the "dot" format
 eigenval.hEigenvalues of the Conley index map
 indcache.hCached Conley indices for a Morse decomposition
 indknown.hKnown Conley indices for a dynamical system
 indpair.hThe Conley index pair computation
 indpop2d.hKnown Conley indices for a dynamical system
 invpart.hComputation of the invariant part of a set of cubes
 m_differ.hA sample difference equation
 m_duffing_a.hAn approximate time-t map for the Duffing equations
 m_globclog.hGlobally coupled logistic maps
 m_harvest.hA nonlinear population model map with harvesting
 m_henon.hThe Henon map
 m_inf.hThe time-t map for an infectious disease model
 m_lorenz.hThe time-t map for the Lorenz equations
 m_lorenz_a.hAn approximate time-t map for the Lorenz equations
 m_neuron1.hThe nonlinear neuron model map
 m_periodic.hA sample silly periodic map
 m_popmodel.hThe nonlinear Leslie population model map
 m_roessler_a.hAn approximate time-t map for the Roessler equations
 m_stdmap.hThe Standard Map
 m_twocirc.hTwo circles - a simple test map with two invariant circles
 m_twotorus.hTwo circles at a torus - a simple test map with two invariant circles
 m_vpol.hThe time-t map for the Vanderpol equations
 m_vpol1.hA specific time-t map for the Vanderpol ODE
 m_vpol_a.hAn approximate time-t map for the Vanderpol equations
 m_whales.hThe map for the whales population model
 mapcomp.hMap computation routines
 mapcomp_t.hMap computation routines using tight enclosures (not necessarily products of intervals)
 mapdist.hMap computation distance checker
 mapgraph.hComputation of the graph representation of a combinatorial map
 mapopt.hMap optimization data saving, retrieving, and sending
 mapparam.hA simple aggregate data structure for map parameters
 maptight.hAn abstract tight map type that computes the image of a box in terms of a rectangular set from the CAPD package, as opposed to producing a rectangular bounding box (product of intervals)
 maptype.hAn abstract map type
 matcharr.hArray for matching Morse decompositions
 matchdec.hMatching Morse decompositions
 morsecache.hCaching Morse decompositions using compressed binary files
 morsedec.hMorse decompositions
 odeapprox.hA generic method for computing a time-t map for ODEs in an approximate way
 odeintegr.hODE integration parameters: guessing, adjusting, saving
 odetimet.cppA generic method for computing a time-t map for ODEs
 odetimet.hA generic method for computing a time-t map for ODEs
 p_differ.hParameters for a sample difference equation in R^2 with 2 parameters
 p_duffing.hParameters for the Duffing map with 2 parameters
 p_globclog.hParameters for the globally coupled logistic maps
 p_harvest.hParameters for a population model with harvesting
 p_henon.hParameters for the Henom map in R^2 with 2 parameters
 p_inf.hParameters for an infectious disease ODE
 p_lorenz.hParameters for the Lorenz equations with 3 parameters
 p_neuron09.hParameters for for the Chialvo neuron model in R^2 with 2 varying parameters
 p_neuron12.hParameters for for the Chialvo neuron model in R^2 with 2 varying parameters
 p_neuron25.hParameters for for the Chialvo neuron model in R^2 with 2 varying parameters
 p_periodic.hParameters for a sample silly periodic map on the 2-torus
 p_pop2demo.hParameters for a sample Leslie population model in R^2 with 2 varying parameters
 p_pop2p.hParameters for a sample Leslie population model in R^2 with 2 varying parameters
 p_roessler.hParameters for the Roessler equations with 2 parameters
 p_stdmap.hParameters for the Standard Map
 p_twocirc.hParameters for a sample map with two circles
 p_twotorus.hParameters for a sample map with two circles on a torus
 p_vpol.hParameters for the Vanderpol map with 2 parameters
 p_whales.hParameters for the whales population model
 plotmdec.hPlotting a Morse decomposition in a PNG picture
 pngimage.hWriting PNG images
 pngsmall.cppThis is a small utility program which decreases in size a PNG file (if necessary) in order to make it fit within the given size
 procexit.hA plug-in for post-processing of Morse decompositions which saves the real exit sets of all the Morse sets
 procharv.hA plug-in for post-processing of Morse decompositions for the harvesting model
 procmdec.hDummy post-processing of Morse decompositions
 procrecur.hPost-processing of Morse decompositions by quantifying the recurrence
 procsave.hA plug-in for post-processing of Morse decompositions which saves the Morse decomposition and the combinatorial map
 procshape.hA plug-in for post-processing of Morse decompositions which saves the real exit sets of all the Morse sets and also makes some shape analysis of the computed sets
 psetjoin.cppA program for joining topologically disjoint sets of points (or cubes)
 spacewrap.hHelper functions and an auxiliary class for space wrapping
 typedefs.hCustomizable data types for the Conley-Morse graphs computation program
 typedyns.hData types for the dynamical systems data structures
 typeintv.hData types for interval arithmetic
 typeparam.hCustomizable data types for the Conley-Morse graphs computation program
 typerect.hData type for the rectangular (Lohner-type) set from CAPD
 typespace.hCustomizable data types for the Conley-Morse graphs computation program
 utils.hUtilites and helper functions
 worker.hThe worker class for the Conley-Morse graphs computation program