| bytecompr.h | Writing and reading binary data (int, double) with bzip2 compression |
| byteutil.h | Utility procedures for writing and reading entire data structures with bzip2 compression, using the two classes "ByteCompressor" and "ByteDecompressor" defined elsewhere |
| c_differ.h | Configuration for a sample difference equation |
| c_duffing_a.h | Configuration for an approximate time-t map for the Duffing equations |
| c_globclog.h | Configuration for globally coupled logistic maps |
| c_harvest.h | Configuration for a nonlinear population model map with harvesting |
| c_henon.h | Configuration for the Henon map |
| c_inf_t.h | Configuration for the time-t map for an infectious disease model |
| c_lorenz.h | Configuration for the time-t map for the Lorenz equations |
| c_lorenz_a.h | Configuration for an approximate time-t map for the Lorenz equations |
| c_lorenz_t.h | Configuration for the time-t map for the Lorenz equations, computed using tight enclosures |
| c_neuron09.h | Configuration for the Chialvo neuron model in R^2 with 2 varying parameters |
| c_neuron12.h | Configuration for the Chialvo neuron model in R^2 with 2 varying parameters |
| c_neuron25.h | Configuration for the Chialvo neuron model in R^2 with 2 varying parameters |
| c_periodic.h | Configuration for a sample silly periodic map |
| c_pop2demo.h | Configuration for a sample Leslie population model in R^2 with 2 varying parameters |
| c_pop2p.h | Configuration for a sample Leslie population model in R^2 with 2 varying parameters |
| c_roessler_a.h | Configuration for an approximate time-t map for the Roessler equations |
| c_stdmap.h | Configuration for the Standard Map |
| c_twocirc.h | Configuration for two circles - a simple test map with two invariant circles |
| c_twotorus.h | Configuration for two circles at a torus - a simple test map with two invariant circles |
| c_vpol.h | Configuration for the time-t map for the Vanderpol equations |
| c_vpol1.h | Configuration for the time-t map for the Vanderpol equations |
| c_vpol_a.h | Configuration for an approximate time-t map for the Vanderpol equations |
| c_whales.h | Configuration for the whales population model |
| cmgraphs.cpp | Conley-Morse graphs - the main program |
| cmsingle.cpp | Computing a single Conley-Morse graph |
| compmap.cpp | Computing the map on a given set of cubes at the final subdivision depth |
| compmdec.h | Computation of Morse decompositions |
| config.h | Choice of configuration settings |
| confinfo.h | Writing configuration settings to an output stream |
| conindex.h | Conley index computation routines |
| coord.h | The coordinator class for the Conley-Morse graphs computation program |
| coverrect.h | Covering a rotated rectangular set or a paralellepiped with cubes with respect to a fixed grid in R^n |
| dataconv.h | Data conversion for sending/receiving |
| datatext.h | Converting a binary data buffer into a printable text and vice versa |
| datavector.h | Data conversion for sending/receiving: std::vectors and hashed sets of any objects |
| dotgraph.h | Writing a graph in the "dot" format |
| eigenval.h | Eigenvalues of the Conley index map |
| indcache.h | Cached Conley indices for a Morse decomposition |
| indknown.h | Known Conley indices for a dynamical system |
| indpair.h | The Conley index pair computation |
| indpop2d.h | Known Conley indices for a dynamical system |
| invpart.h | Computation of the invariant part of a set of cubes |
| m_differ.h | A sample difference equation |
| m_duffing_a.h | An approximate time-t map for the Duffing equations |
| m_globclog.h | Globally coupled logistic maps |
| m_harvest.h | A nonlinear population model map with harvesting |
| m_henon.h | The Henon map |
| m_inf.h | The time-t map for an infectious disease model |
| m_lorenz.h | The time-t map for the Lorenz equations |
| m_lorenz_a.h | An approximate time-t map for the Lorenz equations |
| m_neuron1.h | The nonlinear neuron model map |
| m_periodic.h | A sample silly periodic map |
| m_popmodel.h | The nonlinear Leslie population model map |
| m_roessler_a.h | An approximate time-t map for the Roessler equations |
| m_stdmap.h | The Standard Map |
| m_twocirc.h | Two circles - a simple test map with two invariant circles |
| m_twotorus.h | Two circles at a torus - a simple test map with two invariant circles |
| m_vpol.h | The time-t map for the Vanderpol equations |
| m_vpol1.h | A specific time-t map for the Vanderpol ODE |
| m_vpol_a.h | An approximate time-t map for the Vanderpol equations |
| m_whales.h | The map for the whales population model |
| mapcomp.h | Map computation routines |
| mapcomp_t.h | Map computation routines using tight enclosures (not necessarily products of intervals) |
| mapdist.h | Map computation distance checker |
| mapgraph.h | Computation of the graph representation of a combinatorial map |
| mapopt.h | Map optimization data saving, retrieving, and sending |
| mapparam.h | A simple aggregate data structure for map parameters |
| maptight.h | An abstract tight map type that computes the image of a box in terms of a rectangular set from the CAPD package, as opposed to producing a rectangular bounding box (product of intervals) |
| maptype.h | An abstract map type |
| matcharr.h | Array for matching Morse decompositions |
| matchdec.h | Matching Morse decompositions |
| morsecache.h | Caching Morse decompositions using compressed binary files |
| morsedec.h | Morse decompositions |
| odeapprox.h | A generic method for computing a time-t map for ODEs in an approximate way |
| odeintegr.h | ODE integration parameters: guessing, adjusting, saving |
| odetimet.cpp | A generic method for computing a time-t map for ODEs |
| odetimet.h | A generic method for computing a time-t map for ODEs |
| p_differ.h | Parameters for a sample difference equation in R^2 with 2 parameters |
| p_duffing.h | Parameters for the Duffing map with 2 parameters |
| p_globclog.h | Parameters for the globally coupled logistic maps |
| p_harvest.h | Parameters for a population model with harvesting |
| p_henon.h | Parameters for the Henom map in R^2 with 2 parameters |
| p_inf.h | Parameters for an infectious disease ODE |
| p_lorenz.h | Parameters for the Lorenz equations with 3 parameters |
| p_neuron09.h | Parameters for for the Chialvo neuron model in R^2 with 2 varying parameters |
| p_neuron12.h | Parameters for for the Chialvo neuron model in R^2 with 2 varying parameters |
| p_neuron25.h | Parameters for for the Chialvo neuron model in R^2 with 2 varying parameters |
| p_periodic.h | Parameters for a sample silly periodic map on the 2-torus |
| p_pop2demo.h | Parameters for a sample Leslie population model in R^2 with 2 varying parameters |
| p_pop2p.h | Parameters for a sample Leslie population model in R^2 with 2 varying parameters |
| p_roessler.h | Parameters for the Roessler equations with 2 parameters |
| p_stdmap.h | Parameters for the Standard Map |
| p_twocirc.h | Parameters for a sample map with two circles |
| p_twotorus.h | Parameters for a sample map with two circles on a torus |
| p_vpol.h | Parameters for the Vanderpol map with 2 parameters |
| p_whales.h | Parameters for the whales population model |
| plotmdec.h | Plotting a Morse decomposition in a PNG picture |
| pngimage.h | Writing PNG images |
| pngsmall.cpp | This is a small utility program which decreases in size a PNG file (if necessary) in order to make it fit within the given size |
| procexit.h | A plug-in for post-processing of Morse decompositions which saves the real exit sets of all the Morse sets |
| procharv.h | A plug-in for post-processing of Morse decompositions for the harvesting model |
| procmdec.h | Dummy post-processing of Morse decompositions |
| procrecur.h | Post-processing of Morse decompositions by quantifying the recurrence |
| procsave.h | A plug-in for post-processing of Morse decompositions which saves the Morse decomposition and the combinatorial map |
| procshape.h | A plug-in for post-processing of Morse decompositions which saves the real exit sets of all the Morse sets and also makes some shape analysis of the computed sets |
| psetjoin.cpp | A program for joining topologically disjoint sets of points (or cubes) |
| spacewrap.h | Helper functions and an auxiliary class for space wrapping |
| typedefs.h | Customizable data types for the Conley-Morse graphs computation program |
| typedyns.h | Data types for the dynamical systems data structures |
| typeintv.h | Data types for interval arithmetic |
| typeparam.h | Customizable data types for the Conley-Morse graphs computation program |
| typerect.h | Data type for the rectangular (Lohner-type) set from CAPD |
| typespace.h | Customizable data types for the Conley-Morse graphs computation program |
| utils.h | Utilites and helper functions |
| worker.h | The worker class for the Conley-Morse graphs computation program |
